Publications
Hypothesis generation for rare and undiagnosed diseases through clustering and classifying time-versioned biological ontologies Michael S. Bradshaw, Connor Gibbs, Skylar Martin, Taylor Firman, Alisa Gaskell, Bailey Fosdick, and Ryan Layer December 2024 - PLOS ONE, 19(12):e0309205 - DOI: 10.1371/journal.pone.0309205
Maximum Caliber Can Build and Infer Models of Oscillation in a Three-Gene Feedback Network Taylor Firman, Anar Amgalan, and Kingshuk Ghosh December 2018 - The Journal of Physical Chemistry B - DOI: 10.1021/acs.jpcb.8b07465
Modulating charge patterning and ionic strength to induce conformational changes in intrinsically disordered proteins Jonathan Huihui, Taylor Firman, and Kingshuk Ghosh August 2018 - The Journal of Chemical Physics, 149(8):085101 - DOI: 10.1063/1.5037727
Sequence charge decoration dictates coil-globule transition in intrinsically disordered proteins Taylor Firman and Kingshuk Ghosh March 2018 - The Journal of Chemical Physics, 148(12):123305 - DOI: 10.1063/1.5005821
Maximum Caliber Can Characterize Genetic Switches with Multiple Hidden Species Taylor Firman, Stephen Wedekind, Thomas J. McMorrow, and Kingshuk Ghosh February 2018 - The Journal of Physical Chemistry B, 122(21) - DOI: 10.1021/acs.jpcb.7b12251
Building Predictive Models of Genetic Circuits Using the Principle of Maximum Caliber Taylor Firman, Gábor Balázsi, and Kingshuk Ghosh November 2017 - Biophysical Journal, 113(9):2121-2130 - DOI: 10.1016/j.bpj.2017.08.057
Reduction of plasma density in a Helicity Injected Torus using a helicon preionization source Aaron C. Hossack, Taylor Firman, Thomas Jarboe, James Prager, Brian Victor, Jonathan S Wrobel, and Timothy Ziemba October 2013 - The Review of Scientific Instruments, 84(10):103506 - DOI: 10.1063/1.4824707
Competition enhances stochasticity in biochemical reactions Taylor Firman and Kingshuk Ghosh September 2013 - The Journal of Chemical Physics, 139(12):121915 - DOI: 10.1063/1.4816527
A Geometrical Interpretation of Bell’s Inequalities Taylor Firman January 2012 - Journal of Undergraduate Research in Physics, MS133 - www.jurp.org/2012/MS133.pdf